Publications

Publications of the Filtered Push Project

• Submitted for publication April 4, 2012 Robert A. Morris, Lei Dou, James Hanken, Maureen Kelly, David B. Lowery, Bertram Ludaescher, James A. Macklin, Paul J. Morris, Semantic Annotation of Mutable Data.File:SemAnnMutableDataV0.997 Integrated.pdf

• TDWG 2012 Presentation. Lowery, D. 2012. Generating Annotations for the Semantic Web From Closed-world Data. Proceedings of TDWG 2012, Beijing, China.

• TDWG 2012 Presentation. Kelly, M. (Lowery D.) 2012. Semantic Layers in Database Applications and Implications for Schema Mapping. Proceedings of TDWG 2012, Beijing, China.

• Dou, L., G. Cao, P.J. Morris, R.A. Morris, B. Ludäscher, J.A. Macklin, J. Hanken. 2012. Kurator: A Kepler Package for Data Curation Workflows, Procedia Computer Science, 9:1614-1619, doi:10.1016/j.procs.2012.04.177

• SPNHC 2012 Morris, P.J. Macklin, J.A., Dou, L., Hanken, J., Kelly, M., Lowery, D.B., Ludaescher, B., McPhillips, T.M., Morris, B. 2012. Connecting expert knowledge to specimens: Remote annotation of data in a Filtered Push network. SPNHC 2012 Program & Abstracts. p.98.

• SPNHC 2012 Macklin, J.A., Dou, L., Hanken, J., Kelly, M., Lowery, D.B., Ludaescher, B., Morris, P.J., Morris, B. 2012. Planning an ApplePie network based on FilteredPush technology to connect botanical collections. SPNHC 2012 Program & Abstracts. p.66.

• Wang, Z.M. 2012. Entropy on Covers. Data Mining and Knowledge Discovery. 24(1):288-309 doi:10.1007/s10618-011-0230-1

• IDCC11 Lei Dou, James Hanken, Bertram Ludaescher, James A. Macklin, Timothy McPhillips, Paul J. Morris, Robert A. Morris, Zhimin Wang, Sven Koehler. 2011. Automating Data Curation with Kepler Workflows. 7th International Digital Curation Conference. [Poster] http://www.dcc.ac.uk/webfm_send/710

• ICDE 2011 Lei Dou, Daniel Zinn, Timothy McPhillips, Sven Kohler, Sean Riddle, Shawn Bowers, Bertram Ludascher, "Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler," icde, pp.1296-1299, 2011 IEEE 27th International Conference on Data Engineering, 2011

• TDWG 2011 Symposium: Macklin, J.A. 2011. Annotations: No longer just a slip of paper... Proceedings of TDWG 2011, New Orleans, Louisiana, USA.

• TDWG 2011 Presentation: Macklin, J.A. 2011. Annotations: No longer just a slip of paper... Proceedings of TDWG 2011, New Orleans, Louisiana, USA.

• TDWG 2011 Presentation: Macklin, J.A. 2011. Macklin, J.A., P. Desmet, P. Sweeney. 2011. Apple Core: Darwin Core guidelines for herbaria. Proceedings of TDWG 2011, New Orleans, Louisiana, USA.

• IBC 2011 Presentation: Macklin, J.A., H. Cui, P.J. Morris, R.A. Morris. 2011. Floras in the 21st Century: The Flora of North America Saga. International Botanical Congress, Melbourne, Australia. Abstract p.337.

• SPNHC 2011 Presentation: Lei Dou, James Hanken, Bertram Ludaescher, James A. Macklin, Timothy M. McPhillips, Paul J. Morris, Robert A. Morris, Zhimin Wang. Building specimen-data curation pipelines using Kepler workflow technology in a Filtered Push network. Program and Abstracts. pp. 46 [SPNHC DemoCamp live software demonstration] http://www.youtube.com/watch?v=DEkPbvLsud0

• TDWG 2010 Working Session: Macklin, J.A. Annotation of biodiversity data: Toward standards related to their structure, capture, transport, and management. Proceedings of TDWG 2010, Woods Hole, Massachusetts, USA. [online] http://www.tdwg.org/fileadmin/2010conference/documents/Provisional_Proceedings_of_TDWG_2010.pdf

• SPNHC 2010 Presentation: Macklin, J.A., P.J. Morris, C. Iloabachie, M. Kelly, D. Lowery, R,A. Morris, D. Tremonte, Z. Wang. 2010. Herbarium Networks Part IV: Demonstration of a prototype web interface for a 'Filtered Push' network to enable discovery, filtering, and annotation of botanical and other natural history specimen data. SPNHC 25th Annual Meeting: Biodiversity 2010 and Beyond: Science and Collections. Program and Abstracts. pp. 83-84 [SPNHC Demo Camp live software demonstration] File:Spnhc_demonstration_components.png

• AGU 2009 Fall Meeting Presentation: Morris, P.J., M. Kelly, D.B. Lowery, J.A. Macklin, R. Morris, D. Tremonte, Z. Wang. Filtered Push: Annotating Distributed Data for Quality Control and Fitness for Use Analysis. Eos Trans. AGU, 90(52), Fall Meet. Suppl., Abstract IN34B-08 File:Morris AGU 2009.pdf

• TDWG 2009 Presentation: Morris, P. J., J.A. Macklin, M. Kelly, R. A. Morris, Z. Wang. 2009. Using Distributed Annotations for Continuous Quality Control of Biodiversity Data. Proceedings of TDWG 2009, Montpellier, France. http://www.tdwg.org/proceedings/article/view/501

• TDWG 2009 Presentation: Wang, Z., M. Kelly, D. B. Lowery, J. A. Macklin, P. J. Morris, R. A. Morris, D. Tremonte. 2009. Capabilities and interfaces of a prototype Filtered Push network. Proceedings of TDWG 2009. Montpellier, France. http://www.tdwg.org/proceedings/article/view/502

• Botany & Mycology 2009 Presentation: Macklin, J.A., P.J. Morris, R. A. Morris, Z. Wang, M. Kelly. 2009. Herbarium Networks Part III: A prototype for exchange of botanical specimen data to reduce duplicative effort and improve quality using a ‘filtered push’. Botany & Mycology 2009 Abstract 795 http://www.botanyconference.org/engine/search/index.php?func=detail&aid=795

• SPNHC 2009 Presentation: Macklin, J.A., P. Morris, R. Morris, Z. Wang, M. Kelly. Herbarium Networks Part III: A prototype for exchange of botanical specimen data to reduce duplicative effort and improve quality using a 'filtered push' File:SPNHC 2009 FP.pdf

• SPNHC 2009 Poster: Morris, P.J., M. Kelly, J.A. Macklin, R. Morris, Z. Wang. Remote Annotations: Keeping natural history collections vital in an age of digital dissemination. SPNHC 24th Annual Meeting Apstracts and Programme. p.99, Poster 20. File:Spnhc 2009 annotations revised.pdf File:Annotations revised.odp

• SPNHC 2009 Presentation: Morris, P.J. Summary reports for users to improve data quality: Experimenting with tagged biodiversity information in social media File:SPNHC 2009 eol qc tool.pdf Discussion of [1]

• CSIE 2009 Paper: Wang Z., H. Dong, M. Kelly, J.A. Macklin, P.J. Morris, R.A. Morris. 2009. Filtered-Push: A Map-Reduce Platform for Collaborative Taxonomic Data Management. Computer Science and Information Engineering, 2009 WRI World Congress on. 3:731-735 doi: 10.1109/CSIE.2009.948 Preprint: Filtered-Push: A Map-Reduce Platform for Collaborative Taxonomic Data Management.

• TDWG 2008 Presentation: A Hadoop-based Prototype for the Filtered-Push project Wang, Z., Dong, H., Kelly, M., Macklin, J., Morris, P., & Morris, R. 2008 Sep 17. A Hadoop-based Prototype for the Filtered-Push project. Proceedings of TDWG. [Online] http://www.tdwg.org/proceedings/article/view/352 http://www.tdwg.org/fileadmin/2008conference/slides/Wang_20_01_Hadoop.ppt

• TDWG 2008 Poster: Remote Annotation of Specimens: Use cases and messages of a Filtered Push network Morris, P., Dong, H., Kelly, M., Macklin, J., Morris, R., & Wang, Z. 2008 Sep 16. Remote Annotation of Specimens: Use cases and messages of a Filtered Push network. Proceedings of TDWG. [Online] http://www.tdwg.org/proceedings/article/view/351 File:TDWG 2008 Poster A1.pdf

Background

• Presentation on the Botanical Duplicate problem and need for data interchange between collections databases. File:Macklin SPNHC 2006.odp Walks through use case of duplicate example from Collector: Demmaree, D; Collector Number: 38875; Id: Ephedra viridis. “The wind was blowing too strong to make specimens in the field. I boxed up enough for 87 sheets . I simply pruned the shrub a little.”

• Technical presentation from 2006 "Filtered Push: Exploring technical methods for efficient use of community knowledge to improve the quality of collections data." File:SPNHC 2006 Filtered push technical.odp

• Early concept was of a set of client nodes that connected through a few central servers, with a clear functional distinction between the roles of nodes at participating repositories and centralized message brokers.
  

  

  Old network diagram