Publications

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Publications of the Filtered Push Project

  • SPNHC 2014 Morris, P.J., Hanken, J., Kelly, M., Lowery, D.B., Ludäscher, B., Macklin, J.A., McCallum, C., Morris, R.A., Song, T., Sweeney, P. 2014. Integrating High Throughput Digitization with Distributed Software: Supporting Data Flows in the New England Vascular Plant Network with FilteredPush Technologies. Society for the Preservation of Natural History Collections 29th Annual Meeting Programme & Abstracts. p.34.
  • McCallum, C., Morris, P.J. (Presenter), Hanken, J., Kelly, M., Lowery, D.B., Ludäscher, B., Macklin, J.A., Morris, R.A., Song, T. 2014. FP-DataEntry, a tool for bringing community knowledge into data transcription applications. Society for the Preservation of Natural History Collections 29th Annual Meeting Programme & Abstracts. DemoCamp. p.67.
  • Song, T., S. Dey, S. Bowers, and B. Ludaescher. (2014) Improving Workflow Design Using Abstract Provenance Graphs. In Provenance and Annotation of Data and Processes – 5th International Provenance and Annotation Workshop (IPAW), Cologne, Germany, 2014. Abstract.
  • IDCC 2014 Song, T., S. Kohler, B. Ludaescher, J. Hanken, M. Kelly, D. Lowery, J. Macklin, P. Morris, and R. Morris. (2014) Towards Automated Workflow Design and Analysis of Declarative Curation Workflows. In: 9th International Digital Curation Conference (IDCC), San Francisco, CA, February 2014.
  • Tschöpe, O., Macklin, J. A., Morris, R. A., Suhrbier, L. and Berendsohn, W.G. (2013) Annotating Biodiversity Data via the Internet. Taxon 62(6): 1248-1258. [1]
  • AGU 2013 Ludäscher, B., V. Cuevas-Vicenttn, P. Missier, S. Dey, P. Kianamajd, Y. Wei, D. Koop, F. Chirigati, I. Altintas, K. Belhajjame, and S. Bowers. (2013) Scientific Workflows + Provenance = Better (Meta-)Data Management. AGU Fall Meeting Abstracts, December 2013. Abstract #ED43E-07.
  • Morris, P.J., E. Gilbert, J. Hanken, M. Kelly, S. Koehler, D. Lowery, B. Ludäscher, J.A. Macklin, R.A. Morris, T. Song. 2013. Expanding the scope of collections databases without schema modifications: Using annotations, rules, and semantic web technologies to add a open world layer to natural science collections data. SPNHC 2013. Program book and abstracts for the 28th annual meeting of the Society for the Preservation of Natural History Collections. p.33.
  • SPNHC 2013 DemoCamp Morris, P.J., J. A. Macklin, J. Hanken, M. Kelly, S. Koehler, D. Lowery, B. Ludäscher, R.A. Morris, T. Song. 2013. Improving Natural Science Collections data through quality control for research using Kepler workflows embedded in a FilteredPush network. SPNHC 2013. Program book and abstracts for the 28th annual meeting of the Society for the Preservation of Natural History Collections. p.33. Roadmap for demonstration.
  • TDWG 2012 Presentation. Lowery, D. 2012. Generating Annotations for the Semantic Web From Closed-world Data. Proceedings of TDWG 2012, Beijing, China.
  • TDWG 2012 Presentation. Kelly, M. (Lowery D.) 2012. Semantic Layers in Database Applications and Implications for Schema Mapping. Proceedings of TDWG 2012, Beijing, China.
  • Dou, L., G. Cao, P.J. Morris, R.A. Morris, B. Ludäscher, J.A. Macklin, J. Hanken. 2012. Kurator: A Kepler Package for Data Curation Workflows, Procedia Computer Science, 9:1614-1619, doi:10.1016/j.procs.2012.04.177
  • SPNHC 2012 DemoCamp Morris, P.J. Macklin, J.A., Dou, L., Hanken, J., Kelly, M., Lowery, D.B., Ludaescher, B., McPhillips, T.M., Morris, B. 2012. Connecting expert knowledge to specimens: Remote annotation of data in a Filtered Push network. SPNHC 2012 Program & Abstracts. p.98. Roadmap for demonstration
  • SPNHC 2012 Macklin, J.A., Dou, L., Hanken, J., Kelly, M., Lowery, D.B., Ludaescher, B., Morris, P.J., Morris, B. 2012. Planning an ApplePie network based on FilteredPush technology to connect botanical collections. SPNHC 2012 Program & Abstracts. p.66.
  • IDCC11 Lei Dou, James Hanken, Bertram Ludaescher, James A. Macklin, Timothy McPhillips, Paul J. Morris, Robert A. Morris, Zhimin Wang, Sven Koehler. 2011. Automating Data Curation with Kepler Workflows. 7th International Digital Curation Conference. [Poster] http://www.dcc.ac.uk/webfm_send/710
  • ICDE 2011 Lei Dou, Daniel Zinn, Timothy McPhillips, Sven Kohler, Sean Riddle, Shawn Bowers, Bertram Ludascher, "Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler," icde, pp.1296-1299, 2011 IEEE 27th International Conference on Data Engineering, 2011
  • TDWG 2011 Symposium: Macklin, J.A. 2011. Annotations: No longer just a slip of paper... Proceedings of TDWG 2011, New Orleans, Louisiana, USA.
  • TDWG 2011 Presentation: Macklin, J.A. 2011. Annotations: No longer just a slip of paper... Proceedings of TDWG 2011, New Orleans, Louisiana, USA.
  • TDWG 2011 Presentation: Macklin, J.A. 2011. Macklin, J.A., P. Desmet, P. Sweeney. 2011. Apple Core: Darwin Core guidelines for herbaria. Proceedings of TDWG 2011, New Orleans, Louisiana, USA.
  • IBC 2011 Presentation: Macklin, J.A., H. Cui, P.J. Morris, R.A. Morris. 2011. Floras in the 21st Century: The Flora of North America Saga. International Botanical Congress, Melbourne, Australia. Abstract p.337.
  • SPNHC 2011 DemoCamp: Lei Dou, James Hanken, Bertram Ludaescher, James A. Macklin, Timothy M. McPhillips, Paul J. Morris, Robert A. Morris, Zhimin Wang. Building specimen-data curation pipelines using Kepler workflow technology in a Filtered Push network. Program and Abstracts. pp. 46 [SPNHC DemoCamp live software demonstration] http://www.youtube.com/watch?v=DEkPbvLsud0
  • SPNHC 2010 Presentation: Macklin, J.A., P.J. Morris, C. Iloabachie, M. Kelly, D. Lowery, R,A. Morris, D. Tremonte, Z. Wang. 2010. Herbarium Networks Part IV: Demonstration of a prototype web interface for a 'Filtered Push' network to enable discovery, filtering, and annotation of botanical and other natural history specimen data. SPNHC 25th Annual Meeting: Biodiversity 2010 and Beyond: Science and Collections. Program and Abstracts. pp. 83-84 [SPNHC Demo Camp live software demonstration] File:Spnhc_demonstration_components.png
  • AGU 2009 Fall Meeting Presentation: Morris, P.J., M. Kelly, D.B. Lowery, J.A. Macklin, R. Morris, D. Tremonte, Z. Wang. Filtered Push: Annotating Distributed Data for Quality Control and Fitness for Use Analysis. Eos Trans. AGU, 90(52), Fall Meet. Suppl., Abstract IN34B-08 File:Morris AGU 2009.pdf
  • SPNHC 2009 Presentation: Macklin, J.A., P. Morris, R. Morris, Z. Wang, M. Kelly. Herbarium Networks Part III: A prototype for exchange of botanical specimen data to reduce duplicative effort and improve quality using a 'filtered push' File:SPNHC 2009 FP.pdf

Background

  • Presentation on the Botanical Duplicate problem and need for data interchange between collections databases. File:Macklin SPNHC 2006.odp Walks through use case of duplicate example from Collector: Demmaree, D; Collector Number: 38875; Id: Ephedra viridis. “The wind was blowing too strong to make specimens in the field. I boxed up enough for 87 sheets . I simply pruned the shrub a little.”
  • Early concept was of a set of client nodes that connected through a few central servers, with a clear functional distinction between the roles of nodes at participating repositories and centralized message brokers.
    Old network diagram
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